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InGen is still incharge of the islands and they will forbid anybody from afecting the dinosars on the islnad, however it is possable that they will atempt to do this in Jurassic Park IV

Another visitor commented: In the Jurassic Park novels by Michael Crichton, the first island gets blown up by the government and the second one is left unknown but all the dinosaurs are going to die from a disease called DX eventually anyway.